☰ Navigation Tabs
A hexameric barrel state of a de novo coiled-coil assembly: CC-Pent2-I17Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 MQ water, 1.5 mM peptide, 12.5% v/v Ethylene glycol
Crystal Properties Matthews coefficient Solvent content 1.88 34.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.885 α = 74.45 b = 43.292 β = 88.71 c = 57.216 γ = 86.99
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 55.12 69.43 0.04233 0.0542 0.03334 0.998 16.45 2.5 29690 25.38
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.551 1.606 13.65 0.7852 1.031 0.66 0.722 0.66 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.55 55.12 28217 1458 69.51 0.2214 0.2194 0.2281 0.2594 0.2633 RANDOM 33.732
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.33 0.42 -0.81 -2.12 -2.06 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.378 r_dihedral_angle_2_deg 9.945 r_dihedral_angle_1_deg 2.776 r_angle_refined_deg 0.968 r_angle_other_deg 0.386 r_chiral_restr 0.052 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2764 Nucleic Acid Atoms Solvent Atoms 126 Heterogen Atoms 4
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction Arcimboldo phasing