☰ Navigation Tabs
WelO5* L221A bound to Zn(II), Cl, 2-oxoglutarate, and 12-epi-hapalindole C
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8ACV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293.15 30% PEG-4000, 200 mM LiSO4, in 100 mM TRIS pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.41 49.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.458 α = 90 b = 106.458 β = 90 c = 385.22 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.000009 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.68 49.17 99.9 1 16.7 38.9 37222 67.52
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.68 2.8 0.782
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 8ACV 2.685 49.17 37221 1862 99.847 0.188 0.186 0.1845 0.2315 0.2327 RANDOM 90.612
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.883 0.942 1.883 -6.109
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.031 r_dihedral_angle_6_deg 14.728 r_lrange_it 9.78 r_lrange_other 9.78 r_dihedral_angle_2_deg 8.829 r_dihedral_angle_1_deg 8.462 r_scangle_it 7.83 r_scangle_other 7.785 r_mcangle_it 6.505 r_mcangle_other 6.505
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.031 r_dihedral_angle_6_deg 14.728 r_lrange_it 9.78 r_lrange_other 9.78 r_dihedral_angle_2_deg 8.829 r_dihedral_angle_1_deg 8.462 r_scangle_it 7.83 r_scangle_other 7.785 r_mcangle_it 6.505 r_mcangle_other 6.505 r_scbond_it 5.396 r_scbond_other 5.328 r_mcbond_it 4.492 r_mcbond_other 4.491 r_dihedral_angle_other_2_deg 4.41 r_angle_refined_deg 1.435 r_angle_other_deg 0.459 r_symmetry_xyhbond_nbd_refined 0.28 r_nbd_refined 0.207 r_symmetry_nbd_other 0.197 r_nbtor_refined 0.182 r_nbd_other 0.18 r_xyhbond_nbd_refined 0.16 r_metal_ion_refined 0.111 r_symmetry_nbd_refined 0.099 r_ncsr_local_group_2 0.084 r_symmetry_nbtor_other 0.083 r_ncsr_local_group_1 0.083 r_ncsr_local_group_4 0.082 r_ncsr_local_group_5 0.081 r_ncsr_local_group_6 0.079 r_ncsr_local_group_3 0.078 r_chiral_restr 0.06 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8690 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 161
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing