8ARW

Small molecular stabilizer for ERalpha and 14-3-3 (1076402)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2770.095 M HEPES (pH 7.1 ), PEG400 (28% (v/v)), 0.19 M CaCl2 and 5% (v/v) Glycerol
Crystal Properties
Matthews coefficientSolvent content
2.6553.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.996α = 90
b = 112.27β = 90
c = 62.646γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2021-08-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, DESY BEAMLINE P111.033200PETRA III, DESYP11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.545.5599.30.99929.713.245963
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.530.978

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4JC31.545.5543635231099.140.14480.142950.17888RANDOM19.548
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.15-1.92-1.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.176
r_dihedral_angle_4_deg14.786
r_dihedral_angle_3_deg11.067
r_dihedral_angle_1_deg4.599
r_long_range_B_refined3.414
r_long_range_B_other3.182
r_rigid_bond_restr2.967
r_scangle_other2.442
r_scbond_it1.947
r_scbond_other1.946
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.176
r_dihedral_angle_4_deg14.786
r_dihedral_angle_3_deg11.067
r_dihedral_angle_1_deg4.599
r_long_range_B_refined3.414
r_long_range_B_other3.182
r_rigid_bond_restr2.967
r_scangle_other2.442
r_scbond_it1.947
r_scbond_other1.946
r_mcangle_it1.91
r_mcangle_other1.909
r_angle_refined_deg1.598
r_mcbond_it1.419
r_mcbond_other1.419
r_angle_other_deg1.368
r_chiral_restr0.112
r_bond_refined_d0.014
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1899
Nucleic Acid Atoms
Solvent Atoms290
Heterogen Atoms31

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
Aimlessdata scaling
MOLREPphasing