8AR1 | pdb_00008ar1

Solution structure of TLR3 transmembrane and cytoplasmic juxtamembrane regions


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC270 uM [U-13C; U-15N] protein, 128 mM [U-2H] DPC, 20 mM potassium phosphate, 4 mM TCEP, 0.05 % w/v sodium azide, 1 mM TSP95% H2O/5% D2O50 mM7.0AMBIENT atm318Bruker AVANCE III 600
22D 1H-13C HSQC aliphatic constant time270 uM [U-13C; U-15N] protein, 128 mM [U-2H] DPC, 20 mM potassium phosphate, 4 mM TCEP, 0.05 % w/v sodium azide, 1 mM TSP95% H2O/5% D2O50 mM7.0AMBIENT atm318Bruker AVANCE III 600
32D 1H-13C HSQC aliphatic270 uM [U-13C; U-15N] protein, 128 mM [U-2H] DPC, 20 mM potassium phosphate, 4 mM TCEP, 0.05 % w/v sodium azide, 1 mM TSP95% H2O/5% D2O50 mM7.0AMBIENT atm318Bruker AVANCE III 600
42D 1H-13C HSQC aromatic270 uM [U-13C; U-15N] protein, 128 mM [U-2H] DPC, 20 mM potassium phosphate, 4 mM TCEP, 0.05 % w/v sodium azide, 1 mM TSP95% H2O/5% D2O50 mM7.0AMBIENT atm318Bruker AVANCE III 600
53D HNCO270 uM [U-13C; U-15N] protein, 128 mM [U-2H] DPC, 20 mM potassium phosphate, 4 mM TCEP, 0.05 % w/v sodium azide, 1 mM TSP95% H2O/5% D2O50 mM7.0AMBIENT atm318Bruker AVANCE III 600
63D HN(CO)CA270 uM [U-13C; U-15N] protein, 128 mM [U-2H] DPC, 20 mM potassium phosphate, 4 mM TCEP, 0.05 % w/v sodium azide, 1 mM TSP95% H2O/5% D2O50 mM7.0AMBIENT atm318Bruker AVANCE III 600
73D HNCA270 uM [U-13C; U-15N] protein, 128 mM [U-2H] DPC, 20 mM potassium phosphate, 4 mM TCEP, 0.05 % w/v sodium azide, 1 mM TSP95% H2O/5% D2O50 mM7.0AMBIENT atm318Bruker AVANCE III 600
83D HCCH-TOCSY270 uM [U-13C; U-15N] protein, 128 mM [U-2H] DPC, 20 mM potassium phosphate, 4 mM TCEP, 0.05 % w/v sodium azide, 1 mM TSP95% H2O/5% D2O50 mM7.0AMBIENT atm318Bruker AVANCE III 600
93D HCCH-TOCSY270 uM [U-13C; U-15N] protein, 128 mM [U-2H] DPC, 20 mM potassium phosphate, 4 mM TCEP, 0.05 % w/v sodium azide, 1 mM TSP95% H2O/5% D2O50 mM7.0AMBIENT atm318Bruker AVANCE III 600
103D 1H-15N NOESY270 uM [U-13C; U-15N] protein, 128 mM [U-2H] DPC, 20 mM potassium phosphate, 4 mM TCEP, 0.05 % w/v sodium azide, 1 mM TSP95% H2O/5% D2O50 mM7.0AMBIENT atm318Bruker AVANCE III 600
113D 1H-13C NOESY aliphatic270 uM [U-13C; U-15N] protein, 128 mM [U-2H] DPC, 20 mM potassium phosphate, 4 mM TCEP, 0.05 % w/v sodium azide, 1 mM TSP95% H2O/5% D2O50 mM7.0AMBIENT atm318Bruker AVANCE III 600
123D hCCH-COSY aromatic270 uM [U-13C; U-15N] protein, 128 mM [U-2H] DPC, 20 mM potassium phosphate, 4 mM TCEP, 0.05 % w/v sodium azide, 1 mM TSP95% H2O/5% D2O50 mM7.0AMBIENT atm318Bruker AVANCE III 600
132D CBHD aromatic270 uM [U-13C; U-15N] protein, 128 mM [U-2H] DPC, 20 mM potassium phosphate, 4 mM TCEP, 0.05 % w/v sodium azide, 1 mM TSP95% H2O/5% D2O50 mM7.0AMBIENT atm318Bruker AVANCE III 600
142D 1H-15N IPAP-HSQC220 uM [U-15N] protein, 142 mM DPC, 40 mM potassium phosphate, 4 mM TCEP, 0.05 % w/v sodium azide, 1 mM TSP, 37 mg/mL dGpG95% H2O/5% D2O90 mM7.0AMBIENT atm318Bruker AVANCE III 800
152D 1H-15N HSQC220 uM [U-15N] protein, 142 mM DPC, 40 mM potassium phosphate, 4 mM TCEP, 0.05 % w/v sodium azide, 1 mM TSP, 37 mg/mL dGpG95% H2O/5% D2O90 mM7.0AMBIENT atm318Bruker AVANCE III 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
2BrukerAVANCE III800
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure calculationCYANA3.98.13Guntert, Mumenthaler and Wuthrich
2processingTopSpin3.0Bruker Biospin
3chemical shift assignmentCARA1.9.7.1Keller and Wuthrich
4peak pickingCARA1.9.7.1Keller and Wuthrich
5data analysisMOLMOLKoradi, Billeter and Wuthrich