8AP0

ForT Mutant T138V


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7293.15Bis-Tris Propane [20mM] pH7.0, Glycerol [20%], PEG 8000 [16%], Monopotassium phosphate [40mM]
Crystal Properties
Matthews coefficientSolvent content
3.4554.37

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 66.23α = 90
b = 139.042β = 90
c = 109.651γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 XE 16M2021-02-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.9795DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.66010011510.363680
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.630.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE6YQQ1.659.86563680330099.9970.1590.15670.203431.414
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.7430.822-1.565
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.693
r_dihedral_angle_4_deg14.45
r_dihedral_angle_3_deg12.177
r_scangle_it8.1
r_scangle_other8.1
r_lrange_it7.188
r_lrange_other7.041
r_scbond_other6.8
r_scbond_it6.799
r_dihedral_angle_1_deg6.585
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.693
r_dihedral_angle_4_deg14.45
r_dihedral_angle_3_deg12.177
r_scangle_it8.1
r_scangle_other8.1
r_lrange_it7.188
r_lrange_other7.041
r_scbond_other6.8
r_scbond_it6.799
r_dihedral_angle_1_deg6.585
r_mcangle_other5.365
r_mcangle_it5.364
r_mcbond_it4.678
r_mcbond_other4.637
r_rigid_bond_restr1.63
r_angle_refined_deg1.47
r_angle_other_deg1.317
r_metal_ion_refined0.367
r_nbd_refined0.194
r_symmetry_nbd_refined0.183
r_xyhbond_nbd_refined0.182
r_symmetry_nbd_other0.178
r_nbd_other0.17
r_nbtor_refined0.157
r_symmetry_xyhbond_nbd_refined0.114
r_symmetry_nbtor_other0.077
r_chiral_restr0.066
r_bond_refined_d0.007
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2513
Nucleic Acid Atoms
Solvent Atoms310
Heterogen Atoms48

Software

Software
Software NamePurpose
REFMACrefinement
DIALSdata reduction
DIALSdata scaling
PHASERphasing