8AOZ | pdb_00008aoz

ForT Mutant L24A

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6YQQ

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7	293.15	Bis-Tris Propane [20mM] pH7.0, Glycerol [20%], PEG 8000 [16%], Monopotassium phosphate [40mM]

Crystal Properties
Matthews coefficient	Solvent content
2.36	47.86

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 78.847	α = 90
b = 78.847	β = 90
c = 110.981	γ = 90

Symmetry
Space Group	P 41 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 XE 16M		2021-07-06	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	1.3776	Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.9	64.28	100	0.106	1	16	23.2		28350

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.9	1.94	100		0.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	6YQQ	1.9	64.277	28294	1369	99.996	0.197	0.1949	0.2	0.2322	0.24	48.488

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.98			-0.98		1.959

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	28.327
r_dihedral_angle_4_deg	13.747
r_dihedral_angle_3_deg	12.441
r_lrange_it	6.952
r_lrange_other	6.952
r_dihedral_angle_1_deg	6.78
r_scangle_it	4.419
r_scangle_other	4.418
r_scbond_other	3.12
r_scbond_it	3.119
r_mcangle_it	2.998
r_mcangle_other	2.998
r_mcbond_it	2.11
r_mcbond_other	2.106
r_angle_refined_deg	1.424
r_angle_other_deg	1.302
r_symmetry_nbd_refined	0.218
r_symmetry_xyhbond_nbd_refined	0.216
r_metal_ion_refined	0.211
r_nbd_refined	0.19
r_symmetry_nbd_other	0.187
r_nbd_other	0.177
r_nbtor_refined	0.159
r_xyhbond_nbd_refined	0.159
r_symmetry_xyhbond_nbd_other	0.097
r_symmetry_nbtor_other	0.08
r_chiral_restr	0.059
r_bond_refined_d	0.007
r_gen_planes_refined	0.006
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2444
Nucleic Acid Atoms
Solvent Atoms	119
Heterogen Atoms	84

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
DIALS	data scaling
PHASER	phasing