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Small molecule stabilizer for ERalpha and 14-3-3 (1075478)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JC3 4JC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES (pH 7.7), PEG400 (24% (v/v)), 0.19 M CaCl2 and 5% (v/v) Glycerol
Crystal Properties Matthews coefficient Solvent content 2.67 53.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.377 α = 90 b = 112.627 β = 90 c = 62.565 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.033200 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 41.86 98.86 0.998 37.2 13.5 56782
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.401 1.451 0.994
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4JC3 1.4 41.86 53892 2892 98.84 0.12693 0.12555 0.1259 0.1529 0.1526 RANDOM 13.744
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 0.2 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.119 r_dihedral_angle_4_deg 18.461 r_dihedral_angle_3_deg 10.904 r_dihedral_angle_1_deg 4.5 r_long_range_B_refined 3.772 r_long_range_B_other 3.002 r_scangle_other 2.164 r_rigid_bond_restr 1.812 r_scbond_it 1.775 r_scbond_other 1.774
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.119 r_dihedral_angle_4_deg 18.461 r_dihedral_angle_3_deg 10.904 r_dihedral_angle_1_deg 4.5 r_long_range_B_refined 3.772 r_long_range_B_other 3.002 r_scangle_other 2.164 r_rigid_bond_restr 1.812 r_scbond_it 1.775 r_scbond_other 1.774 r_angle_refined_deg 1.6 r_mcangle_it 1.575 r_mcangle_other 1.575 r_angle_other_deg 1.305 r_mcbond_it 1.163 r_mcbond_other 1.161 r_chiral_restr 0.099 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1898 Nucleic Acid Atoms Solvent Atoms 353 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling MOLREP phasing