8ANF

Small molecule stabilizer for ERalpha and 14-3-3 (1074359)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2770.095 M HEPES (pH 7.3, PEG400 (24% (v/v)), 0.19 M CaCl2 and 5% (v/v) Glycerol
Crystal Properties
Matthews coefficientSolvent content
2.6553.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.115α = 90
b = 112.503β = 90
c = 62.425γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2021-05-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, DESY BEAMLINE P111.033200PETRA III, DESYP11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.445.4699.840.99919.213.457052
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.450.86

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4JC31.445.4654149290399.820.137460.136160.16201RANDOM16.364
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.070.18-1.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.816
r_dihedral_angle_4_deg17.456
r_dihedral_angle_3_deg10.583
r_dihedral_angle_1_deg4.482
r_long_range_B_refined2.818
r_long_range_B_other2.348
r_scangle_other1.698
r_rigid_bond_restr1.686
r_angle_refined_deg1.401
r_scbond_it1.357
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.816
r_dihedral_angle_4_deg17.456
r_dihedral_angle_3_deg10.583
r_dihedral_angle_1_deg4.482
r_long_range_B_refined2.818
r_long_range_B_other2.348
r_scangle_other1.698
r_rigid_bond_restr1.686
r_angle_refined_deg1.401
r_scbond_it1.357
r_scbond_other1.356
r_mcangle_it1.337
r_mcangle_other1.336
r_angle_other_deg1.291
r_mcbond_it0.959
r_mcbond_other0.958
r_chiral_restr0.09
r_bond_refined_d0.01
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1898
Nucleic Acid Atoms
Solvent Atoms306
Heterogen Atoms29

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing