☰ Navigation Tabs
14-3-3 sigma sirtuin-3 phospho-peptide complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YWT 1YWT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 0.1 M Hepes/NaOH pH 7.5, 0.2 M CaCl2, 26% (v/v) PEG 400, 5% (v/v) glycerol, 1 mM TCEP
Crystal Properties Matthews coefficient Solvent content 2.62 53.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.6 α = 90 b = 112.39 β = 90 c = 62.69 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-06-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918409 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.11 45.68 97.6 0.051 0.061 0.999 13.19 3.504 111528 12.932
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.11 1.14 83.5 0.636 0.78 0.633 1.75 2.778
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1YWT 1.11 45.68 95338 5111 87.91 0.1278 0.1269 0.1266 0.1456 0.1452 RANDOM 13.818
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 -0.62 1.11
RMS Deviations Key Refinement Restraint Deviation r_rigid_bond_restr 16.646 r_dihedral_angle_3_deg 14.919 r_dihedral_angle_2_deg 7.369 r_dihedral_angle_1_deg 5.734 r_angle_refined_deg 1.746 r_angle_other_deg 1.146 r_chiral_restr 0.096 r_bond_other_d 0.027 r_bond_refined_d 0.014 r_gen_planes_refined 0.009
RMS Deviations Key Refinement Restraint Deviation r_rigid_bond_restr 16.646 r_dihedral_angle_3_deg 14.919 r_dihedral_angle_2_deg 7.369 r_dihedral_angle_1_deg 5.734 r_angle_refined_deg 1.746 r_angle_other_deg 1.146 r_chiral_restr 0.096 r_bond_other_d 0.027 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1893 Nucleic Acid Atoms Solvent Atoms 405 Heterogen Atoms 6
Software Software Software Name Purpose XDS data reduction XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction