8AMT

OBD-RepB pMV158 domain


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2770.1 M Tri-sodium citrate pH 5.0 1M LiCl 30 % PEG 6000
Crystal Properties
Matthews coefficientSolvent content
2.5752.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.45α = 90
b = 48.15β = 90
c = 73.75γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2016-09-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALBA BEAMLINE XALOC0.979ALBAXALOC

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.532.6699.80.1869.113.426009
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.532.661.3870.023

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE3DKX1.532.68225957128799.6740.1560.15540.174612.903
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.0090.114-0.105
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.83
r_dihedral_angle_4_deg27.7
r_dihedral_angle_3_deg11.365
r_dihedral_angle_1_deg6.527
r_lrange_other5.373
r_lrange_it5.371
r_scangle_it3.866
r_scangle_other3.864
r_scbond_it2.516
r_scbond_other2.515
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.83
r_dihedral_angle_4_deg27.7
r_dihedral_angle_3_deg11.365
r_dihedral_angle_1_deg6.527
r_lrange_other5.373
r_lrange_it5.371
r_scangle_it3.866
r_scangle_other3.864
r_scbond_it2.516
r_scbond_other2.515
r_mcangle_other2.195
r_mcangle_it2.178
r_angle_refined_deg1.905
r_angle_other_deg1.483
r_mcbond_it1.414
r_mcbond_other1.384
r_nbd_refined0.224
r_nbd_other0.186
r_symmetry_nbd_other0.182
r_xyhbond_nbd_refined0.182
r_nbtor_refined0.176
r_symmetry_xyhbond_nbd_refined0.115
r_chiral_restr0.104
r_symmetry_nbtor_other0.085
r_symmetry_nbd_refined0.084
r_bond_refined_d0.014
r_gen_planes_refined0.011
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1056
Nucleic Acid Atoms
Solvent Atoms140
Heterogen Atoms24

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
pointlessdata scaling
PHASERphasing