8AM7

Small molecular stabilizer for ERalpha and 14-3-3 (1076397)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2770.095 M HEPES (pH 7.3), PEG400 (24% (v/v)), 0.19 M CaCl2 and 5% (v/v) Glycerol
Crystal Properties
Matthews coefficientSolvent content
2.6653.73

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.207α = 90
b = 112.483β = 90
c = 62.453γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2021-08-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, DESY BEAMLINE P111.03320PETRA III, DESYP11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.545.5299.90.99928.813.446359
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.530.979

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4JC31.545.5244016232499.810.137950.136580.16341RANDOM16.556
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.121.28-1.4
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.625
r_dihedral_angle_4_deg15.324
r_dihedral_angle_3_deg10.826
r_dihedral_angle_1_deg4.386
r_long_range_B_refined3.451
r_long_range_B_other2.905
r_scangle_other2.526
r_scbond_it2.035
r_scbond_other2.034
r_mcangle_it1.758
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.625
r_dihedral_angle_4_deg15.324
r_dihedral_angle_3_deg10.826
r_dihedral_angle_1_deg4.386
r_long_range_B_refined3.451
r_long_range_B_other2.905
r_scangle_other2.526
r_scbond_it2.035
r_scbond_other2.034
r_mcangle_it1.758
r_mcangle_other1.757
r_mcbond_it1.303
r_mcbond_other1.303
r_angle_refined_deg1.285
r_angle_other_deg1.252
r_rigid_bond_restr1.168
r_chiral_restr0.08
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1899
Nucleic Acid Atoms
Solvent Atoms312
Heterogen Atoms30

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
Aimlessdata scaling
MOLREPphasing