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structure of the ordered core of Knr4 (loop 189-217 deleted)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5J1B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 285 28 %v/v PSB (Complex ingredient)
0.05 M (NH4)2SO4 (Salt)
0.05 M LiSO4 (Salt)
0.1 M BIS-TRIS prop 8.5 pH (Buffer)
Crystal Properties Matthews coefficient Solvent content 2.58 52.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.129 α = 90 b = 103.129 β = 90 c = 93.587 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2022-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.8856 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 45.16 99.9 0.071 0.076 0.022 0.99 18.7 11.3 28787
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.27 99.4 1.143 1.196 0.352 0.751 2.1 11.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 5j1b 2.2 45.16 27287 1459 99.97 0.1696 0.168 0.2005 0.2205 RANDOM 65.432
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.7 -0.35 -0.7 2.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 18.163 r_dihedral_angle_3_deg 17.13 r_dihedral_angle_1_deg 8.111 r_angle_refined_deg 2.286 r_angle_other_deg 0.829 r_chiral_restr 0.116 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3447 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement BUSTER refinement XDS data reduction XDS data scaling REFMAC phasing