8AIT

Crystal structure of cutinase PbauzCut from Pseudomonas bauzanensis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.1 M Sodium acetate 4.5, 50 % w/v PEG 400, 0.2 M Lithium sulfate
Crystal Properties
Matthews coefficientSolvent content
1.8533.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.1α = 90
b = 52.9β = 106.305
c = 56.748γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2018-03-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.91587DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.2452.999.60.0970.0630.9916.13.269263
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.241.2696.60.4830.3140.56323.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE4CG11.2441.36768414332398.5340.2150.21420.23798.832
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.2210.147-0.4420.493
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg24.096
r_dihedral_angle_6_deg17.678
r_dihedral_angle_3_deg12.618
r_dihedral_angle_1_deg7.106
r_lrange_it4.494
r_lrange_other4.171
r_angle_refined_deg1.707
r_scangle_it1.245
r_scangle_other1.21
r_scbond_it0.867
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg24.096
r_dihedral_angle_6_deg17.678
r_dihedral_angle_3_deg12.618
r_dihedral_angle_1_deg7.106
r_lrange_it4.494
r_lrange_other4.171
r_angle_refined_deg1.707
r_scangle_it1.245
r_scangle_other1.21
r_scbond_it0.867
r_scbond_other0.786
r_mcangle_other0.709
r_mcangle_it0.708
r_angle_other_deg0.595
r_mcbond_it0.438
r_mcbond_other0.424
r_xyhbond_nbd_refined0.25
r_nbd_refined0.23
r_symmetry_xyhbond_nbd_refined0.219
r_symmetry_nbd_other0.193
r_nbtor_refined0.184
r_nbd_other0.181
r_symmetry_nbd_refined0.111
r_chiral_restr0.09
r_symmetry_nbtor_other0.083
r_gen_planes_refined0.011
r_bond_refined_d0.01
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1995
Nucleic Acid Atoms
Solvent Atoms265
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
DIALSdata reduction
DIALSdata scaling
MOLREPphasing