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TapA acts as specific chaperone in TasA non-amyloid filament formation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6HQC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 24% PEG3350, 0.35M LiNO3
Crystal Properties Matthews coefficient Solvent content 2.11 41.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.199 α = 90 b = 52.936 β = 90 c = 167.763 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2020-05-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.07 38.44 98.8 0.066 0.999 9.77 3.53 153127
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.07 1.13 0.154 0.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6HQC 1.07 38.44 151026 2100 98.83 0.1486 0.1482 0.1577 0.1766 0.1836 RANDOM 18.961
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.04 1.94 -2.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.906 r_dihedral_angle_4_deg 13.163 r_dihedral_angle_3_deg 13.137 r_dihedral_angle_1_deg 7.011 r_rigid_bond_restr 4.467 r_angle_refined_deg 1.655 r_angle_other_deg 1.42 r_chiral_restr 0.083 r_bond_refined_d 0.012 r_gen_planes_refined 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.906 r_dihedral_angle_4_deg 13.163 r_dihedral_angle_3_deg 13.137 r_dihedral_angle_1_deg 7.011 r_rigid_bond_restr 4.467 r_angle_refined_deg 1.655 r_angle_other_deg 1.42 r_chiral_restr 0.083 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2859 Nucleic Acid Atoms Solvent Atoms 743 Heterogen Atoms 28
Software Software Software Name Purpose XDS data reduction XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction