8ACZ | pdb_00008acz

Solid-State NMR Atomic-Resolution Structure of the Protein Encoded by Gene V of fd Bacteriophage in Complex with Viral ssDNA


SOLID-STATE NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D DARR15ms200 g/L [U-100% 13C; U-100% 15N] gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
22D DARR100ms200 g/L [U-100% 13C; U-100% 15N] gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
32D DARR50ms200 g/L [1,3-13C]-glycerol gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
42D DARR100ms200 g/L [1,3-13C]-glycerol gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
52D DARR150ms200 g/L [1,3-13C]-glycerol gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
82D CORD150ms200 g/L [1,3-13C]-glycerol gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
72D DARR300ms200 g/L [1,3-13C]-glycerol gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
62D CORD300ms200 g/L [1,3-13C]-glycerol gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
92D DARR300ms #2200 g/L [1,3-13C]-glycerol gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
102D CHHC150u200 g/L [1,3-13C]-glycerol gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
112D CHHC300u200 g/L [1,3-13C]-glycerol gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
122D DARR5ms200 g/L [U-100% 13C; U-100% 15N] gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
132D DARR250ms200 g/L [U-100% 13C; U-100% 15N] gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
142D RFDR6200 g/L [U-100% 13C; U-100% 15N] gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
152D INADEQUATE200 g/L [U-100% 13C; U-100% 15N] gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
163D NCOCX25200 g/L [U-100% 13C; U-100% 15N] gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
173D NCACX25200 g/L [U-100% 13C; U-100% 15N] gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
182D DARR5ms200 g/L [1,3-13C]-glycerol gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
192D DARR15ms200 g/L [1,3-13C]-glycerol gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
202D NCA200 g/L [1,3-13C]-glycerol gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
212D NCO200 g/L [1,3-13C]-glycerol gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
223D NCOCX100200 g/L [1,3-13C]-glycerol gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
233D NCACX100200 g/L [1,3-13C]-glycerol gVp of fd bacteriophage in complex with the viral ssDNA, 22 g/L ssDNA of fd phage200mM NaCl, 1mM EDTA and 10mM Tris-HCl200mM NaCl mM7.41 atm263Bruker AVANCE III 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number11
Representative Model1 (minimized average structure)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
2structure calculationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
3chemical shift assignmentNMRFAM-SPARKY1.470Lee W, Tonelli M, Markley JL.
4peak pickingNMRFAM-SPARKY1.470Lee W, Tonelli M, Markley JL.
5processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6collectionTopSpinBruker Biospin