8A6I

Structure of the low complexity domain of TDP-43 (fragment 309-350) with methionine sulfoxide modifications


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC500 uM [U-13C; U-15N] TDP-43 fragment 309-350, 20 mM HEPES, 10 mM potassium chloride, 5 mM MgCl2, 1 mM ATP90% H2O/10% D2O10 mM6.81 atm288Bruker AVANCE NEO 600
23D HNCO500 uM [U-13C; U-15N] TDP-43 fragment 309-350, 20 mM HEPES, 10 mM potassium chloride, 5 mM MgCl2, 1 mM ATP90% H2O/10% D2O10 mM6.81 atm288Bruker AVANCE NEO 600
33D HN(CA)CO500 uM [U-13C; U-15N] TDP-43 fragment 309-350, 20 mM HEPES, 10 mM potassium chloride, 5 mM MgCl2, 1 mM ATP90% H2O/10% D2O10 mM6.81 atm288Bruker AVANCE NEO 600
43D HNCA500 uM [U-13C; U-15N] TDP-43 fragment 309-350, 20 mM HEPES, 10 mM potassium chloride, 5 mM MgCl2, 1 mM ATP90% H2O/10% D2O10 mM6.81 atm288Bruker AVANCE NEO 600
53D CBCA(CO)NH500 uM [U-13C; U-15N] TDP-43 fragment 309-350, 20 mM HEPES, 10 mM potassium chloride, 5 mM MgCl2, 1 mM ATP90% H2O/10% D2O10 mM6.81 atm288Bruker AVANCE NEO 600
63D HCC(CO)NH500 uM [U-13C; U-15N] TDP-43 fragment 309-350, 20 mM HEPES, 10 mM potassium chloride, 5 mM MgCl2, 1 mM ATP90% H2O/10% D2O10 mM6.81 atm288Bruker AVANCE NEO 600
73D HNNH500 uM [U-13C; U-15N] TDP-43 fragment 309-350, 20 mM HEPES, 10 mM potassium chloride, 5 mM MgCl2, 1 mM ATP90% H2O/10% D2O10 mM6.81 atm288Bruker AVANCE NEO 600
83D HNHA500 uM [U-13C; U-15N] TDP-43 fragment 309-350, 20 mM HEPES, 10 mM potassium chloride, 5 mM MgCl2, 1 mM ATP90% H2O/10% D2O10 mM6.81 atm288Bruker AVANCE NEO 600
93D 1H-15N NOESY500 uM [U-13C; U-15N] TDP-43 fragment 309-350, 20 mM HEPES, 10 mM potassium chloride, 5 mM MgCl2, 1 mM ATP90% H2O/10% D2O10 mM6.81 atm288Bruker AVANCE NEO 600
103D 1H-13C NOESY aliphatic500 uM [U-13C; U-15N] TDP-43 fragment 309-350, 20 mM HEPES, 10 mM potassium chloride, 5 mM MgCl2, 1 mM ATP90% H2O/10% D2O10 mM6.81 atm288Bruker AVANCE NEO 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE NEO600
NMR Refinement
MethodDetailsSoftware
naCYANA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number20
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCYANA3.98.13Guntert, Mumenthaler and Wuthrich
2structure calculationCYANA3.98.13Guntert, Mumenthaler and Wuthrich
3chemical shift assignmentSparky3.190Goddard
4processingTopSpin4.0.8Bruker Biospin