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Crystal Structure of Ljunganvirus 1 2A protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7ZTW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 20% PEG3350, 0.2 M sodium formate
Crystal Properties Matthews coefficient Solvent content 1.94 36.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.79 α = 90 b = 58.48 β = 90 c = 110.24 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9796 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 50 100 0.056 23.8 12.7 27964
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.77 1.26 1.9 11.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7ZTW 1.73 50 27588 1448 99.92 0.182 0.1803 0.1917 0.2145 0.2233 37.949
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.96 -1.219 0.259
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.818 r_dihedral_angle_3_deg 13.554 r_dihedral_angle_2_deg 11.613 r_lrange_other 9.214 r_lrange_it 9.206 r_dihedral_angle_1_deg 6.909 r_scangle_it 6.72 r_scangle_other 6.718 r_mcangle_it 5.086 r_mcangle_other 5.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.818 r_dihedral_angle_3_deg 13.554 r_dihedral_angle_2_deg 11.613 r_lrange_other 9.214 r_lrange_it 9.206 r_dihedral_angle_1_deg 6.909 r_scangle_it 6.72 r_scangle_other 6.718 r_mcangle_it 5.086 r_mcangle_other 5.086 r_scbond_it 4.974 r_scbond_other 4.971 r_mcbond_it 3.741 r_mcbond_other 3.725 r_angle_refined_deg 1.19 r_angle_other_deg 0.449 r_symmetry_xyhbond_nbd_refined 0.278 r_symmetry_nbd_refined 0.219 r_nbd_other 0.213 r_nbd_refined 0.198 r_symmetry_nbd_other 0.185 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.158 r_ncsr_local_group_1 0.111 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.069 r_chiral_restr_other 0.01 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1961 Nucleic Acid Atoms Solvent Atoms 104 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing