Gcf1p, multimerizes and bridges the mitochondrial DNA from Candida albicans by a specific mechanism.
X-RAY DIFFRACTION - SOLUTION SCATTERING
Crystallization
Crystalization Experiments |
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ID | Method | pH | Temperature | Details |
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1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 293 | 20% PEG 1000
0.1M Na/K-phosphate pH 6.2
0.1M NaCl
3% Glycerol |
Crystal Properties |
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Matthews coefficient | Solvent content |
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2.24 | 45 |
Crystal Data
Unit Cell |
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Length ( Å ) | Angle ( ˚ ) |
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a = 66.63 | α = 90 |
b = 96.9 | β = 90 |
c = 113.06 | γ = 90 |
Symmetry |
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Space Group | P 2 21 21 |
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Diffraction
Diffraction Experiment |
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol |
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1 | 1 | x-ray | 100 | PIXEL | DECTRIS PILATUS 6M | | 2019-06-30 | M | SINGLE WAVELENGTH |
Radiation Source |
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
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1 | SYNCHROTRON | ALBA BEAMLINE XALOC | 0.981664, 1.0 | ALBA | XALOC |
Data Collection
Overall |
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | R Sym I (Observed) | Rrim I (All) | Rpim I (All) | CC (Half) | R Split (All) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot |
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1 | 2.9 | 73.57 | 98.57 | 0.03739 | | | | 1 | | 10.07 | 1.9 | | 16672 | | | 101.08 |
Highest Resolution Shell |
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | R Merge I (Observed) | R-Sym I (Observed) | Rrim I (All) | Rpim I (All) | CC (Half) | R Split (All) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) |
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1 | 2.9 | 3.004 | | | | | | 0.319 | | 0.76 | 1.9 | |
Refinement
Statistics |
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Diffraction ID | Structure Solution Method | Resolution (High) | Resolution (Low) | Cut-off Sigma (I) | Cut-off Sigma (F) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B |
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X-RAY DIFFRACTION | SAD | 2.9 | 73.57 | | 1.33 | | 16589 | 1656 | 98.66 | | 0.2164 | 0.2112 | 0.2631 | | 124.92 |
Temperature Factor Modeling |
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Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] |
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| | | | | |
RMS Deviations |
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Key | Refinement Restraint Deviation |
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f_dihedral_angle_d | 27.4167 |
f_angle_d | 0.9884 |
f_chiral_restr | 0.0531 |
f_bond_d | 0.0074 |
f_plane_restr | 0.007 |
Non-Hydrogen Atoms Used in Refinement |
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Non-Hydrogen Atoms | Number |
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Protein Atoms | 3104 |
Nucleic Acid Atoms | 1628 |
Solvent Atoms | 14 |
Heterogen Atoms | 12 |
Software
Software |
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Software Name | Purpose |
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PHENIX | refinement |
MxCuBE | data collection |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |