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3D reconstruction of the cylindrical assembly of DnaJA2 delta G/F by imposing D5 symmetry
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 80.982 r_mcangle_it 33.943 r_dihedral_angle_2_deg 26.437 r_mcbond_it 19.202 r_dihedral_angle_4_deg 17.461 r_scbond_it 16.07 r_dihedral_angle_3_deg 14.467 r_dihedral_angle_1_deg 6.241 r_angle_refined_deg 1.484 r_chiral_restr 0.086
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 80.982 r_mcangle_it 33.943 r_dihedral_angle_2_deg 26.437 r_mcbond_it 19.202 r_dihedral_angle_4_deg 17.461 r_scbond_it 16.07 r_dihedral_angle_3_deg 14.467 r_dihedral_angle_1_deg 6.241 r_angle_refined_deg 1.484 r_chiral_restr 0.086 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Oligomeric structure of DnaJA2 delta G/F by imposing D5 symmetry
Specimen Preparation Sample Aggregation State FILAMENT Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 47396 Reported Resolution (Å) 6.9 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry D5
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 30
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1200 Maximum Defocus (nm) 3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details Preliminary grid screening was performed manually
EM Software Task Software Package Version PARTICLE SELECTION crYOLO SPHIRE IMAGE ACQUISITION EPU 1.12 CTF CORRECTION Gctf INITIAL EULER ASSIGNMENT RELION 3.0 FINAL EULER ASSIGNMENT RELION 3.0 CLASSIFICATION RELION 3.0 RECONSTRUCTION RELION 3.0 MODEL REFINEMENT REFMAC 5
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE 288620