7XSF

Crystal structure of ClAgl29A

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5.5	293	0.1 M sodium citrate (pH 5.5), 16% PEG3,350

Crystal Properties
Matthews coefficient	Solvent content
2.23	44.87

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 74.577	α = 90
b = 95.521	β = 97.331
c = 83.55	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2020-09-12	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06SA	1.0	SLS	X06SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	82.9	98.9	0.08	0.09	0.999	14.8	7		76908			42.3

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.1	97.3		0.89	0.96	0.9	2.45

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2XSD	2.006	47.806	76891	3855	98.848	0.207	0.2046	0.2427	44.108

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.669		-1.326	7.172		-4.028

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.605
r_dihedral_angle_3_deg	13.664
r_dihedral_angle_1_deg	6.972
r_dihedral_angle_2_deg	6.646
r_lrange_other	5.764
r_lrange_it	5.763
r_scangle_it	4.209
r_scangle_other	4.209
r_mcangle_it	3.944
r_mcangle_other	3.944
r_scbond_it	2.693
r_scbond_other	2.693
r_mcbond_it	2.568
r_mcbond_other	2.563
r_angle_refined_deg	1.082
r_angle_other_deg	0.381
r_metal_ion_refined	0.199
r_nbd_refined	0.197
r_symmetry_nbd_other	0.191
r_nbtor_refined	0.182
r_nbd_other	0.156
r_xyhbond_nbd_refined	0.143
r_symmetry_xyhbond_nbd_refined	0.134
r_symmetry_nbd_refined	0.126
r_symmetry_nbtor_other	0.076
r_chiral_restr	0.055
r_ncsr_local_group_1	0.051
r_gen_planes_refined	0.005
r_bond_refined_d	0.004
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	8634
Nucleic Acid Atoms
Solvent Atoms	203
Heterogen Atoms	15

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing