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Crystal structure of potato 14-3-3 protein St14f
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3AXY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 PEG 8000, Ammonium tartrate, HEPES
Crystal Properties Matthews coefficient Solvent content 4.07 69.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 230.198 α = 90 b = 105.281 β = 104.84 c = 60.987 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2017-10-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9000 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 47.6 99.7 0.063 0.981 28.8 4.3 51160
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.49 0.442
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3axy 2.45 47.58 48586 2573 99.34 0.2123 0.209 0.2017 0.2768 0.2686 RANDOM 73.712
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.05 -1.02 -7.15 0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.117 r_dihedral_angle_3_deg 19.123 r_dihedral_angle_4_deg 18.092 r_dihedral_angle_1_deg 6.846 r_rigid_bond_restr 6.164 r_angle_refined_deg 1.844 r_angle_other_deg 1.409 r_chiral_restr 0.083 r_bond_refined_d 0.012 r_gen_planes_refined 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.117 r_dihedral_angle_3_deg 19.123 r_dihedral_angle_4_deg 18.092 r_dihedral_angle_1_deg 6.846 r_rigid_bond_restr 6.164 r_angle_refined_deg 1.844 r_angle_other_deg 1.409 r_chiral_restr 0.083 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5347 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction PHASER phasing