7X7I

Ancestral L-Lys oxidase (AncLLysO-2) ligand free form

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		295	0.2 M Magnesium chloride hexahydrate, 0.1 M HEPES pH 7.5, 25% w/v Polyethylene glycol 3,350, 0.1 M NDSB-256

Crystal Properties
Matthews coefficient	Solvent content
2.09	41.14

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 79.246	α = 90
b = 76.533	β = 104.389
c = 92.708	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2021-07-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PHOTON FACTORY BEAMLINE BL-5A	1.0	Photon Factory	BL-5A

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.55	44.9	99.8	0.998	12.6	6.6		155511

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.55	1.63			0.952

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	SAD	FREE R-VALUE	1.55	44.9	155157	7653	99.1	0.164	0.163	0.191	20.92

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.001		-0.004	0.001		0.002

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.802
r_dihedral_angle_4_deg	15.976
r_dihedral_angle_3_deg	11.824
r_dihedral_angle_1_deg	6.834
r_lrange_it	5.386
r_lrange_other	5.085
r_scangle_it	3.519
r_scangle_other	3.519
r_mcangle_it	2.684
r_mcangle_other	2.684
r_scbond_other	2.389
r_scbond_it	2.388
r_mcbond_it	1.856
r_mcbond_other	1.846
r_angle_refined_deg	1.775
r_angle_other_deg	1.561
r_nbd_other	0.256
r_symmetry_nbd_refined	0.247
r_nbd_refined	0.22
r_symmetry_nbd_other	0.191
r_symmetry_xyhbond_nbd_refined	0.189
r_nbtor_refined	0.182
r_xyhbond_nbd_refined	0.17
r_chiral_restr	0.091
r_symmetry_nbtor_other	0.083
r_symmetry_xyhbond_nbd_other	0.033
r_bond_refined_d	0.013
r_gen_planes_refined	0.011
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	9024
Nucleic Acid Atoms
Solvent Atoms	1365
Heterogen Atoms	106

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
SCALA	data scaling
AutoSol	phasing