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Crystal structure of ENF peptide binding protein from Silkworm
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 289 O.5M magnesium formate, 0.1M Bis-Tris pH 6.5
Crystal Properties Matthews coefficient Solvent content 4.22 70.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.477 α = 90 b = 121.692 β = 90 c = 253.769 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-07-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.979 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.799 50 99.5 0.082 0.082 36.67 13.2 78393
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 99 0.928 3 12.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.799 35.543 78178 3936 99.279 0.174 0.1733 0.184 0.1853 0.195 RANDOM 28.324
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.004 -0.106 0.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.148 r_dihedral_angle_4_deg 16.223 r_dihedral_angle_3_deg 13.474 r_lrange_it 8.44 r_lrange_other 8.265 r_dihedral_angle_1_deg 7.366 r_scangle_it 6.405 r_scangle_other 6.404 r_mcangle_it 4.84 r_mcangle_other 4.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.148 r_dihedral_angle_4_deg 16.223 r_dihedral_angle_3_deg 13.474 r_lrange_it 8.44 r_lrange_other 8.265 r_dihedral_angle_1_deg 7.366 r_scangle_it 6.405 r_scangle_other 6.404 r_mcangle_it 4.84 r_mcangle_other 4.84 r_scbond_it 4.244 r_scbond_other 4.243 r_mcbond_it 3.679 r_mcbond_other 3.672 r_angle_other_deg 2.41 r_angle_refined_deg 1.997 r_symmetry_nbd_refined 0.232 r_nbd_other 0.225 r_symmetry_nbd_other 0.216 r_nbd_refined 0.208 r_nbtor_refined 0.183 r_symmetry_xyhbond_nbd_refined 0.173 r_xyhbond_nbd_refined 0.164 r_chiral_restr 0.109 r_symmetry_nbtor_other 0.081 r_bond_other_d 0.035 r_gen_planes_other 0.018 r_bond_refined_d 0.017 r_gen_planes_refined 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3434 Nucleic Acid Atoms Solvent Atoms 456 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction SCALA data scaling AutoSol phasing