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Crystal structure of the HSA complex with mycophenolate and aripiprazole
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6A7P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 32% PEG 3350, 50mM potassium phosphate pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.3 46.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.998 α = 90 b = 183.182 β = 106.514 c = 59.175 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.98 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.99 50 98.4 0.104 12.44 6.2 24010
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.99 3.1 95.2 1.114 1.52 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6A7P 2.992 48.231 23776 1222 97.997 0.199 0.1961 0.1965 0.2461 0.2393 82.163
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 19.331 5.167 19.059 -38.389
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.729 r_lrange_it 18.407 r_dihedral_angle_3_deg 15.029 r_mcangle_it 13.892 r_scangle_it 13.647 r_dihedral_angle_4_deg 13.461 r_scbond_it 9.897 r_mcbond_it 9.524 r_dihedral_angle_1_deg 4.833 r_angle_refined_deg 1.234
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.729 r_lrange_it 18.407 r_dihedral_angle_3_deg 15.029 r_mcangle_it 13.892 r_scangle_it 13.647 r_dihedral_angle_4_deg 13.461 r_scbond_it 9.897 r_mcbond_it 9.524 r_dihedral_angle_1_deg 4.833 r_angle_refined_deg 1.234 r_symmetry_nbd_refined 0.333 r_nbtor_refined 0.295 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.188 r_symmetry_xyhbond_nbd_refined 0.1 r_chiral_restr 0.069 r_bond_refined_d 0.006 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8337 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 106
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing