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Crystal Structure of PitA fragment from pilus islet-2 of Streptococcus oralis with Tb-Xo4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 295 0.2 M ammonium acetate 0.1 M HEPES pH 7.2, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.15 60.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.815 α = 79.883 b = 70.288 β = 86.895 c = 82.71 γ = 87.186
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-09-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.42379 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.343 69.235 82.6 0.065 0.03 0.998 15.7 5.6 38153
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.343 2.608 0.552 0.252 0.881
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.343 69.139 38153 1787 66.425 0.196 0.1942 0.1942 0.2396 0.2401 62.857
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.747 -0.162 -1.082 -0.291 0.637 -0.327
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.611 r_dihedral_angle_3_deg 17.108 r_dihedral_angle_4_deg 16.95 r_lrange_it 10.855 r_dihedral_angle_1_deg 7.647 r_scangle_it 6.603 r_mcangle_it 5.356 r_scbond_it 4.206 r_mcbond_it 3.226 r_angle_refined_deg 1.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.611 r_dihedral_angle_3_deg 17.108 r_dihedral_angle_4_deg 16.95 r_lrange_it 10.855 r_dihedral_angle_1_deg 7.647 r_scangle_it 6.603 r_mcangle_it 5.356 r_scbond_it 4.206 r_mcbond_it 3.226 r_angle_refined_deg 1.82 r_nbtor_refined 0.308 r_nbd_refined 0.211 r_symmetry_nbd_refined 0.209 r_xyhbond_nbd_refined 0.143 r_ncsr_local_group_1 0.13 r_symmetry_xyhbond_nbd_refined 0.128 r_chiral_restr 0.121 r_bond_refined_d 0.011 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7581 Nucleic Acid Atoms Solvent Atoms 114 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling CRANK2 phasing