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NMR solution structure of the De novo designed small beta-barrel protein 33_bp_sh3
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 1.25 mM [U-13C; U-15N] 33_bp_sh3, 50 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide 95% H2O/5% D2O 132 mM 6.5 1 atm 298 Bruker AVANCE III HD 600 2 3D 1H-13C NOESY aliphatic 1.25 mM [U-13C; U-15N] 33_bp_sh3, 50 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide 95% H2O/5% D2O 132 mM 6.5 1 atm 298 Bruker AVANCE III HD 600 3 3D 1H-13C NOESY aromatic 1.25 mM [U-13C; U-15N] 33_bp_sh3, 50 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide 95% H2O/5% D2O 132 mM 6.5 1 atm 298 Bruker AVANCE III HD 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III HD 600
NMR Refinement Method Details Software torsion angle dynamics CYANA molecular dynamics X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (target function)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis TopSpin 3.6 Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis XEASY Bartels et al. 4 chemical shift assignment GARANT Bartels, Guntert, Billeter and Wuthrich 7 refinement CYANA 3.98.13 Guntert, Mumenthaler and Wuthrich 6 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 5 data analysis TALOS Cornilescu, Delaglio and Bax 8 structure calculation CYANA 3.98.13 Guntert, Mumenthaler and Wuthrich 9 geometry optimization X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore