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Caulobacter segnis arene reductase (CSAR) - WT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6MYW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 Crystal Screen #20: 0.2 M Ammonium sulfate, 0.1 M Sodium acetate trihydrate pH 4.6, 25% w/v Polyethylene glycol 4,000
Protein dissolved in 100 mM KPi, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.23 44.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.47 α = 90 b = 104.175 β = 90 c = 144.328 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2018-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS-II BEAMLINE 17-ID-1 0.9201 NSLS-II 17-ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 29.68 99.8 0.147 0.159 0.06 0.998 12.9 13.3 33499
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.83 97.3 1.39 1.513 0.589 0.745
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6MYW 1.79 29.678 33460 1663 99.827 0.155 0.1531 0.168 0.1859 0.1968 18.671
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.436 2.188 -0.752
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.065 r_dihedral_angle_4_deg 17.07 r_dihedral_angle_3_deg 13.373 r_dihedral_angle_1_deg 7.026 r_lrange_it 5.15 r_lrange_other 4.959 r_scangle_it 4.024 r_scangle_other 3.913 r_scbond_it 2.867 r_scbond_other 2.767
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.065 r_dihedral_angle_4_deg 17.07 r_dihedral_angle_3_deg 13.373 r_dihedral_angle_1_deg 7.026 r_lrange_it 5.15 r_lrange_other 4.959 r_scangle_it 4.024 r_scangle_other 3.913 r_scbond_it 2.867 r_scbond_other 2.767 r_mcangle_it 1.797 r_mcangle_other 1.797 r_angle_refined_deg 1.592 r_angle_other_deg 1.464 r_mcbond_it 1.34 r_mcbond_other 1.313 r_symmetry_xyhbond_nbd_refined 0.329 r_symmetry_nbd_refined 0.245 r_nbd_refined 0.204 r_symmetry_nbd_other 0.179 r_nbtor_refined 0.168 r_xyhbond_nbd_refined 0.168 r_nbd_other 0.165 r_chiral_restr 0.09 r_symmetry_nbtor_other 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2651 Nucleic Acid Atoms Solvent Atoms 294 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing