7S1H
Wild-type Escherichia coli ribosome with antibiotic linezolid
ELECTRON MICROSCOPY
| Sample |
|---|
| wild-type Escherichia coli ribosome with antibiotic linezolid |
| Specimen Preparation | |
|---|---|
| Sample Aggregation State | PARTICLE |
| Vitrification Instrument | FEI VITROBOT MARK IV |
| Cryogen Name | ETHANE |
| Sample Vitrification Details | |
| 3D Reconstruction | |
|---|---|
| Reconstruction Method | SINGLE PARTICLE |
| Number of Particles | 360239 |
| Reported Resolution (Å) | 2.35 |
| Resolution Method | FSC 0.143 CUT-OFF |
| Other Details | |
| Refinement Type | |
| Symmetry Type | POINT |
| Point Symmetry | C1 |
| Map-Model Fitting and Refinement | |||||
|---|---|---|---|---|---|
| Id | 1 | ||||
| Refinement Space | REAL | ||||
| Refinement Protocol | FLEXIBLE FIT | ||||
| Refinement Target | |||||
| Overall B Value | |||||
| Fitting Procedure | |||||
| Details | |||||
| Data Acquisition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Detector Type | GATAN K3 (6k x 4k) | ||||||||
| Electron Dose (electrons/Å**2) | 67.8 | ||||||||
| Imaging Experiment | 1 |
|---|---|
| Date of Experiment | |
| Temperature (Kelvin) | |
| Microscope Model | FEI TITAN KRIOS |
| Minimum Defocus (nm) | |
| Maximum Defocus (nm) | |
| Minimum Tilt Angle (degrees) | |
| Maximum Tilt Angle (degrees) | |
| Nominal CS | 2.7 |
| Imaging Mode | BRIGHT FIELD |
| Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER |
| Nominal Magnification | |
| Calibrated Magnification | |
| Source | FIELD EMISSION GUN |
| Acceleration Voltage (kV) | 300 |
| Imaging Details |
| EM Software | ||
|---|---|---|
| Task | Software Package | Version |
| IMAGE ACQUISITION | SerialEM | v1.0.0-beta |
| CTF CORRECTION | cisTEM | v1.0.0-beta |
| MODEL FITTING | PHENIX | 1.19.2 |
| MODEL FITTING | UCSF ChimeraX | 1.2.5 (2021-05-24) |
| MODEL FITTING | ISOLDE | 1.2.5 (2021-05-24) |
| MODEL FITTING | Coot | 0.8.9.3-pre (revision-count 8011) |
| MODEL FITTING | PyMOL | Version 1.2r3pre |
| INITIAL EULER ASSIGNMENT | cisTEM | v1.0.0-beta |
| FINAL EULER ASSIGNMENT | cisTEM | v1.0.0-beta |
| CLASSIFICATION | cisTEM | v1.0.0-beta |
| RECONSTRUCTION | cisTEM | v1.0.0-beta |
| MODEL REFINEMENT | PHENIX | 1.19.2 |
| MODEL REFINEMENT | ISOLDE | 1.2.2 |
| Image Processing | ||||
|---|---|---|---|---|
| CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
| PHASE FLIPPING AND AMPLITUDE CORRECTION | 441587 | |||
