☰ Navigation Tabs
Hen egg-white lysozyme with ionic liquid ethanolammonium formate 4 mol%
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7JMU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293.15 ethanolammonium formate 4mol% (ca. 20wt%) in water
Crystal Properties Matthews coefficient Solvent content 1.98 37.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.76 α = 90 b = 76.76 β = 90 c = 38.56 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2018-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.95370 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.07 24.29 99.4 0.999 14.3 13.4 50880
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.07 1.09 100 0.91
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7JMU 1.07 24.29 48595 2672 99.94 0.153 0.152 0.1527 0.1697 0.1704 10.712
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.26 0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.877 r_dihedral_angle_4_deg 21.157 r_dihedral_angle_3_deg 12.113 r_rigid_bond_restr 8.241 r_dihedral_angle_1_deg 6.494 r_lrange_it 3.257 r_lrange_other 3.151 r_scangle_it 3.093 r_scangle_other 3.082 r_scbond_it 2.574
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.877 r_dihedral_angle_4_deg 21.157 r_dihedral_angle_3_deg 12.113 r_rigid_bond_restr 8.241 r_dihedral_angle_1_deg 6.494 r_lrange_it 3.257 r_lrange_other 3.151 r_scangle_it 3.093 r_scangle_other 3.082 r_scbond_it 2.574 r_scbond_other 2.524 r_mcangle_other 2.413 r_mcangle_it 2.395 r_angle_refined_deg 2.283 r_mcbond_it 2.023 r_mcbond_other 1.985 r_angle_other_deg 0.825 r_symmetry_nbd_refined 0.399 r_nbd_other 0.315 r_nbd_refined 0.259 r_symmetry_nbd_other 0.237 r_symmetry_xyhbond_nbd_refined 0.209 r_nbtor_refined 0.187 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.129 r_symmetry_nbtor_other 0.083 r_bond_refined_d 0.02 r_gen_planes_refined 0.013 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1000 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing