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Hen egg-white lysozyme with ionic liquid ethanolammonium formate 6.7 mol%
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7JMU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293.15 ethanolammonium formate 6.7 mol% (ca. 30wt%) in water
Crystal Properties Matthews coefficient Solvent content 1.97 37.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.79 α = 90 b = 76.79 β = 90 c = 38.31 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2018-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.95370 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.38 38.42 100 0.998 16.2 13.9 23925
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.38 1.41 100 0.943
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7JMU 1.38 38.42 22701 1223 99.992 0.146 0.1439 0.1401 0.1758 0.1748 11.827
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.891 0.891 -1.782
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.758 r_dihedral_angle_4_deg 19.261 r_dihedral_angle_3_deg 12.907 r_dihedral_angle_1_deg 6.182 r_rigid_bond_restr 5.373 r_scangle_it 3.471 r_scangle_other 3.454 r_lrange_it 3.376 r_lrange_other 3.32 r_scbond_it 2.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.758 r_dihedral_angle_4_deg 19.261 r_dihedral_angle_3_deg 12.907 r_dihedral_angle_1_deg 6.182 r_rigid_bond_restr 5.373 r_scangle_it 3.471 r_scangle_other 3.454 r_lrange_it 3.376 r_lrange_other 3.32 r_scbond_it 2.96 r_scbond_other 2.942 r_angle_refined_deg 2.055 r_mcangle_other 1.881 r_mcangle_it 1.818 r_mcbond_it 1.598 r_mcbond_other 1.459 r_angle_other_deg 0.734 r_symmetry_nbd_refined 0.342 r_nbd_other 0.3 r_symmetry_xyhbond_nbd_refined 0.26 r_nbd_refined 0.236 r_symmetry_nbd_other 0.214 r_nbtor_refined 0.185 r_chiral_restr 0.122 r_xyhbond_nbd_refined 0.114 r_xyhbond_nbd_other 0.11 r_symmetry_nbtor_other 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.012 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1000 Nucleic Acid Atoms Solvent Atoms 114 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing