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Hen egg-white lysozyme with ionic liquid ethanolammonium nitrate 1 mol%
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7JMU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 8 293.15 ethanolammonium nitrate 1mol% (ca. 7wt%) in water
Crystal Properties Matthews coefficient Solvent content 1.78 30.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.46 α = 90 b = 62.35 β = 90.57 c = 59.47 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.95372 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 43.03 99.9 0.996 8.5 3.3 19931
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.76 1.8 100 0.615
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7JMU 1.76 29.75 18942 960 99.75 0.138 0.1332 0.1336 0.2243 0.2262 20.718
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.505 1.184 -2.754 1.225
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.065 r_dihedral_angle_4_deg 16.747 r_dihedral_angle_3_deg 14.419 r_dihedral_angle_1_deg 7.45 r_lrange_it 5.577 r_lrange_other 5.497 r_scangle_it 5.056 r_scangle_other 4.977 r_scbond_it 4.188 r_scbond_other 4.071
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.065 r_dihedral_angle_4_deg 16.747 r_dihedral_angle_3_deg 14.419 r_dihedral_angle_1_deg 7.45 r_lrange_it 5.577 r_lrange_other 5.497 r_scangle_it 5.056 r_scangle_other 4.977 r_scbond_it 4.188 r_scbond_other 4.071 r_mcangle_it 4 r_mcangle_other 4 r_rigid_bond_restr 3.909 r_mcbond_it 3.297 r_mcbond_other 3.109 r_angle_refined_deg 1.666 r_angle_other_deg 1.477 r_nbd_other 0.232 r_nbd_refined 0.217 r_symmetry_nbd_other 0.204 r_symmetry_xyhbond_nbd_refined 0.196 r_symmetry_nbd_refined 0.179 r_nbtor_refined 0.171 r_xyhbond_nbd_refined 0.167 r_chiral_restr 0.086 r_symmetry_nbtor_other 0.079 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2000 Nucleic Acid Atoms Solvent Atoms 163 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing