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Discovery of an Anion-Dependent Farnesyltransferase Inhibitor from a Phenotypic Screen
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1O5M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.7 277 PEG 4000, SODIUM ACETATE, KCL
Crystal Properties Matthews coefficient Solvent content 3.15 61.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 169.058 α = 90 b = 169.058 β = 90 c = 68.846 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-10-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.000000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.978 43.13 100 0.113 0.113 13.4 10.1 78499
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.978 1.985 97.2 1.137 1.137 2 10.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1O5M 1.978 43.13 78475 3904 100 0.1633 0.1621 0.1654 0.1854 0.1916 RANDOM 43.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.7144 -1.7144 3.4287
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 15.18 t_omega_torsion 3.25 t_angle_deg 0.86 t_bond_d 0.008 t_dihedral_angle_d t_gen_planes t_it t_chiral_improper_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5859 Nucleic Acid Atoms Solvent Atoms 423 Heterogen Atoms 53
Software Software Software Name Purpose BUSTER refinement autoPROC data reduction XDS data reduction autoPROC data scaling Aimless data scaling MOLREP phasing