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The structure of T.forsythia NanH with oseltamivir
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BBW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 300 7% PEG6000
100 mM HEPES buffer
Crystal Properties Matthews coefficient Solvent content 2.4 48.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.501 α = 90 b = 79.501 β = 90 c = 348.851 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97951 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 79.5 100 0.998 10.6 12.6 87048
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 1.95 0.623 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4bbw 1.92 77.634 82684 4147 95.144 0.315 0.3128 0.2949 0.3457 0.3245 41.123
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.343 -0.343 0.685
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.179 r_dihedral_angle_4_deg 15.913 r_dihedral_angle_3_deg 13.053 r_dihedral_angle_1_deg 7.762 r_lrange_it 3.974 r_lrange_other 3.954 r_angle_refined_deg 1.318 r_angle_other_deg 1.169 r_mcangle_it 1.162 r_mcangle_other 1.162
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.179 r_dihedral_angle_4_deg 15.913 r_dihedral_angle_3_deg 13.053 r_dihedral_angle_1_deg 7.762 r_lrange_it 3.974 r_lrange_other 3.954 r_angle_refined_deg 1.318 r_angle_other_deg 1.169 r_mcangle_it 1.162 r_mcangle_other 1.162 r_scangle_it 0.871 r_scangle_other 0.871 r_mcbond_it 0.649 r_mcbond_other 0.649 r_scbond_it 0.476 r_scbond_other 0.476 r_symmetry_nbd_other 0.183 r_nbd_refined 0.18 r_nbd_other 0.162 r_nbtor_refined 0.147 r_xyhbond_nbd_refined 0.147 r_symmetry_nbd_refined 0.092 r_ncsr_local_group_1 0.08 r_symmetry_nbtor_other 0.071 r_symmetry_xyhbond_nbd_refined 0.07 r_chiral_restr 0.051 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8046 Nucleic Acid Atoms Solvent Atoms 300 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing