7QVW

R396W mutant of the vanadium-dependent bromoperoxidase from Corallina pilulifera


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.1 M Tris-HCl and 2 M ammonium dihydrogen phosphate at pH 5.0
Crystal Properties
Matthews coefficientSolvent content
3.2462

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 182.148α = 90
b = 182.148β = 90
c = 177.186γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2003-05-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE BW7B0.9076EMBL/DESY, HAMBURGBW7B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9249.60397.80.99716.55.6246831
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.921.9580.90.383

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1UP81.92249.603244950246096.980.15310.15310.185530.913
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.5490.2750.549-1.781
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.54
r_dihedral_angle_4_deg16.917
r_dihedral_angle_3_deg13.916
r_lrange_it8.253
r_scangle_it8.248
r_scbond_it8.019
r_dihedral_angle_1_deg6.134
r_mcangle_it5.292
r_mcbond_it4.904
r_angle_refined_deg1.556
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.54
r_dihedral_angle_4_deg16.917
r_dihedral_angle_3_deg13.916
r_lrange_it8.253
r_scangle_it8.248
r_scbond_it8.019
r_dihedral_angle_1_deg6.134
r_mcangle_it5.292
r_mcbond_it4.904
r_angle_refined_deg1.556
r_nbtor_refined0.322
r_symmetry_nbd_refined0.271
r_nbd_refined0.219
r_symmetry_xyhbond_nbd_refined0.16
r_xyhbond_nbd_refined0.147
r_chiral_restr0.102
r_ncsr_local_group_60.061
r_ncsr_local_group_20.06
r_ncsr_local_group_40.06
r_ncsr_local_group_10.058
r_ncsr_local_group_30.057
r_ncsr_local_group_50.054
r_bond_refined_d0.01
r_gen_planes_refined0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms18440
Nucleic Acid Atoms
Solvent Atoms3147
Heterogen Atoms444

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
XDSdata reduction
SCALEPACKdata scaling
XSCALEdata scaling
MOLREPphasing
Omodel building
Cootmodel building