7QNP

Designed Armadillo repeat protein N(A4)M4C(AII) co-crystallized with hen egg white lysozyme


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP29335% (v/v) dioxane, pH undefined
Crystal Properties
Matthews coefficientSolvent content
2.4349.48

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.592α = 90
b = 62.655β = 90
c = 108.74γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2020-02-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.00SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5864299.960.0560.0590.016122.3613.453083
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.5861.6599.980.3840.7021.4813.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5aei1.58641.99753083265499.8760.1880.18650.218532.885
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.39-0.340.731
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.183
r_dihedral_angle_4_deg20.261
r_dihedral_angle_3_deg13.511
r_lrange_it6.914
r_lrange_other6.794
r_dihedral_angle_1_deg5.717
r_scangle_it5.273
r_scangle_other5.272
r_scbond_it3.422
r_scbond_other3.42
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.183
r_dihedral_angle_4_deg20.261
r_dihedral_angle_3_deg13.511
r_lrange_it6.914
r_lrange_other6.794
r_dihedral_angle_1_deg5.717
r_scangle_it5.273
r_scangle_other5.272
r_scbond_it3.422
r_scbond_other3.42
r_mcangle_other3.056
r_mcangle_it3.052
r_mcbond_it2.272
r_mcbond_other2.255
r_angle_refined_deg2.17
r_angle_other_deg1.717
r_symmetry_xyhbond_nbd_refined0.323
r_nbd_other0.318
r_xyhbond_nbd_refined0.285
r_nbd_refined0.239
r_symmetry_nbd_refined0.199
r_symmetry_nbd_other0.193
r_nbtor_refined0.171
r_chiral_restr0.123
r_symmetry_nbtor_other0.088
r_symmetry_xyhbond_nbd_other0.078
r_bond_refined_d0.018
r_gen_planes_refined0.016
r_bond_other_d0.009
r_gen_planes_other0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2778
Nucleic Acid Atoms
Solvent Atoms305
Heterogen Atoms34

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing