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Designed Armadillo repeat protein N(A4)M4C(AII) co-crystallized with hen egg white lysozyme
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5AEI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 35% (v/v) dioxane, pH undefined
Crystal Properties Matthews coefficient Solvent content 2.43 49.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.592 α = 90 b = 62.655 β = 90 c = 108.74 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.586 42 99.96 0.056 0.059 0.016 1 22.36 13.4 53083
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.586 1.65 99.98 0.384 0.702 1.48 13.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5aei 1.586 41.997 53083 2654 99.876 0.188 0.1865 0.1976 0.2185 0.2259 32.885
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 -0.34 0.731
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.183 r_dihedral_angle_4_deg 20.261 r_dihedral_angle_3_deg 13.511 r_lrange_it 6.914 r_lrange_other 6.794 r_dihedral_angle_1_deg 5.717 r_scangle_it 5.273 r_scangle_other 5.272 r_scbond_it 3.422 r_scbond_other 3.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.183 r_dihedral_angle_4_deg 20.261 r_dihedral_angle_3_deg 13.511 r_lrange_it 6.914 r_lrange_other 6.794 r_dihedral_angle_1_deg 5.717 r_scangle_it 5.273 r_scangle_other 5.272 r_scbond_it 3.422 r_scbond_other 3.42 r_mcangle_other 3.056 r_mcangle_it 3.052 r_mcbond_it 2.272 r_mcbond_other 2.255 r_angle_refined_deg 2.17 r_angle_other_deg 1.717 r_symmetry_xyhbond_nbd_refined 0.323 r_nbd_other 0.318 r_xyhbond_nbd_refined 0.285 r_nbd_refined 0.239 r_symmetry_nbd_refined 0.199 r_symmetry_nbd_other 0.193 r_nbtor_refined 0.171 r_chiral_restr 0.123 r_symmetry_nbtor_other 0.088 r_symmetry_xyhbond_nbd_other 0.078 r_bond_refined_d 0.018 r_gen_planes_refined 0.016 r_bond_other_d 0.009 r_gen_planes_other 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2778 Nucleic Acid Atoms Solvent Atoms 305 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing