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Trans structure of rsKiiro Illuminated at 290 K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OOZ experimental model PDB 5OQA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 8.4 295 0.2 M lithium sulfate, 0.1 M Tris-Cl, 25 % PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.21 44.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.747 α = 90 b = 73.524 β = 90 c = 78.106 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-01-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.02 39.053 98.9 0.061 0.999 12.8 6.1 112855
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.02 1.039 0.777 0.593 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5OOZ, 5OQA 1.02 39.053 112852 5501 98.892 0.119 0.1186 0.1367 0.1335 11.113
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.029 -0.16 0.132
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.321 r_dihedral_angle_4_deg 18.577 r_dihedral_angle_3_deg 11.752 r_dihedral_angle_1_deg 6.979 r_rigid_bond_restr 4.675 r_lrange_it 3.523 r_lrange_other 3.26 r_scangle_it 2.935 r_scangle_other 2.92 r_scbond_it 2.669
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.321 r_dihedral_angle_4_deg 18.577 r_dihedral_angle_3_deg 11.752 r_dihedral_angle_1_deg 6.979 r_rigid_bond_restr 4.675 r_lrange_it 3.523 r_lrange_other 3.26 r_scangle_it 2.935 r_scangle_other 2.92 r_scbond_it 2.669 r_scbond_other 2.664 r_angle_refined_deg 2.546 r_mcangle_it 2.249 r_mcangle_other 2.249 r_mcbond_it 1.91 r_mcbond_other 1.905 r_angle_other_deg 1.542 r_symmetry_nbd_refined 0.582 r_symmetry_xyhbond_nbd_refined 0.235 r_xyhbond_nbd_refined 0.206 r_nbd_refined 0.203 r_symmetry_nbd_other 0.192 r_nbd_other 0.188 r_nbtor_refined 0.181 r_chiral_restr 0.12 r_symmetry_nbtor_other 0.096 r_bond_refined_d 0.021 r_symmetry_xyhbond_nbd_other 0.017 r_gen_planes_refined 0.012 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1770 Nucleic Acid Atoms Solvent Atoms 260 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction STARANISO data scaling REFMAC phasing