7QB1

PPARg in complex with inhibitor

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	20mM Tris pH 8.0, 5mM DTT, 100mM NaCl , 2mM EDTA

Crystal Properties
Matthews coefficient	Solvent content
2.5	50.72

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 93.368	α = 90
b = 60.664	β = 102.934
c = 118.254	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 1		2012-07-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID29	0.9762	ESRF	ID29

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.15	50	99.2	0.05	16.2	3.4		34961

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.15	2.23			0.67

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	internal modle	2.2	45.982	32707	1626	99.091	0.201	0.1985	0.2494	59.746

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.124		-0.092	-0.217		0.122

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	38.125
r_dihedral_angle_4_deg	23.046
r_dihedral_angle_3_deg	17.812
r_lrange_it	12.277
r_lrange_other	12.246
r_scangle_it	10.053
r_scangle_other	9.997
r_mcangle_it	7.393
r_mcangle_other	7.392
r_scbond_it	6.997
r_scbond_other	6.944
r_dihedral_angle_1_deg	6.426
r_mcbond_it	5.484
r_mcbond_other	5.48
r_angle_refined_deg	1.679
r_angle_other_deg	1.338
r_symmetry_nbd_refined	0.227
r_nbd_refined	0.221
r_symmetry_nbd_other	0.18
r_nbtor_refined	0.176
r_nbd_other	0.174
r_xyhbond_nbd_refined	0.166
r_symmetry_xyhbond_nbd_refined	0.163
r_symmetry_nbtor_other	0.083
r_chiral_restr	0.08
r_symmetry_xyhbond_nbd_other	0.041
r_bond_refined_d	0.01
r_gen_planes_refined	0.009
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4170
Nucleic Acid Atoms
Solvent Atoms	78
Heterogen Atoms	70

Software

Software
Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing