7Q5I

A glucose-based molecular rotor probes the catalytic site of glycogen phosphorylase.

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	BATCH MODE	6.8	289	N,N-bis(2-hydroxyethyl)-2-aminoethanesulfonic acid, EDTA, DTT, IMP

Crystal Properties
Matthews coefficient	Solvent content
2.47	50.15

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 128.602	α = 90
b = 128.602	β = 90
c = 116.71	γ = 90

Symmetry
Space Group	P 43 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	293	PIXEL	DECTRIS PILATUS 6M-F		2019-08-23	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)	0.9763	PETRA III, EMBL c/o DESY	P13 (MX1)

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	128.6	100	0.999	21.4	20.4		90796			31.5

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.8	1.83			0.769

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5MEM	1.8	30.002	90684	4661	99.961	0.159	0.1583	0.1805	38.558

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.103			1.103		-2.205

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.657
r_dihedral_angle_4_deg	17.999
r_dihedral_angle_3_deg	13.277
r_lrange_it	6.465
r_lrange_other	6.455
r_dihedral_angle_1_deg	6.34
r_scangle_it	5.029
r_scangle_other	5.029
r_mcangle_it	3.208
r_mcangle_other	3.207
r_scbond_it	3.143
r_scbond_other	3.142
r_mcbond_it	2.207
r_mcbond_other	2.207
r_angle_refined_deg	1.313
r_angle_other_deg	1.278
r_symmetry_xyhbond_nbd_refined	0.22
r_nbd_refined	0.197
r_symmetry_nbd_other	0.173
r_nbd_other	0.17
r_nbtor_refined	0.162
r_symmetry_nbd_refined	0.158
r_xyhbond_nbd_refined	0.144
r_symmetry_nbtor_other	0.075
r_chiral_restr	0.068
r_gen_planes_refined	0.006
r_bond_refined_d	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6587
Nucleic Acid Atoms
Solvent Atoms	251
Heterogen Atoms	43

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing