7Q18

Beta-lactoglobulin mutant FAF (I56F/L39A/M107F), unliganded form


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52932.40 M (NH4)2SO4, 0.5 M Tris-HCl pH 8.5
Crystal Properties
Matthews coefficientSolvent content
2.0740.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.905α = 90
b = 64.298β = 112.893
c = 55.497γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-3002018-04-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-F0.97872APS21-ID-F

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.850990.0590.99235.13.727108
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8398.50.8330.88423.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1BSY1.80427.73327090107498.6130.2010.19920.23345.982
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.8051.5360.188-3.9
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.218
r_dihedral_angle_3_deg15.416
r_dihedral_angle_4_deg11.654
r_dihedral_angle_1_deg7.057
r_lrange_it5.485
r_lrange_other5.44
r_scangle_it3.263
r_scangle_other3.262
r_mcangle_it2.369
r_mcangle_other2.369
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.218
r_dihedral_angle_3_deg15.416
r_dihedral_angle_4_deg11.654
r_dihedral_angle_1_deg7.057
r_lrange_it5.485
r_lrange_other5.44
r_scangle_it3.263
r_scangle_other3.262
r_mcangle_it2.369
r_mcangle_other2.369
r_scbond_it2.022
r_scbond_other2.021
r_angle_refined_deg1.662
r_mcbond_it1.554
r_mcbond_other1.553
r_angle_other_deg1.365
r_nbd_other0.288
r_symmetry_nbd_refined0.261
r_symmetry_xyhbond_nbd_refined0.211
r_nbd_refined0.202
r_symmetry_nbd_other0.193
r_xyhbond_nbd_refined0.173
r_nbtor_refined0.163
r_ncsr_local_group_10.146
r_xyhbond_nbd_other0.123
r_chiral_restr0.083
r_symmetry_nbtor_other0.081
r_bond_refined_d0.011
r_gen_planes_refined0.009
r_gen_planes_other0.005
r_bond_other_d0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2364
Nucleic Acid Atoms
Solvent Atoms71
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
PHASERphasing