☰ Navigation Tabs
Beta-lactoglobulin mutant FAF (I56F/L39A/M107F), unliganded form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BSY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 2.40 M (NH4)2SO4, 0.5 M Tris-HCl pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.07 40.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.905 α = 90 b = 64.298 β = 112.893 c = 55.497 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2018-04-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99 0.059 0.992 35.1 3.7 27108
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 98.5 0.833 0.884 2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1BSY 1.804 27.733 27090 1074 98.613 0.201 0.1992 0.2097 0.233 0.2431 45.982
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.805 1.536 0.188 -3.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.218 r_dihedral_angle_3_deg 15.416 r_dihedral_angle_4_deg 11.654 r_dihedral_angle_1_deg 7.057 r_lrange_it 5.485 r_lrange_other 5.44 r_scangle_it 3.263 r_scangle_other 3.262 r_mcangle_it 2.369 r_mcangle_other 2.369
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.218 r_dihedral_angle_3_deg 15.416 r_dihedral_angle_4_deg 11.654 r_dihedral_angle_1_deg 7.057 r_lrange_it 5.485 r_lrange_other 5.44 r_scangle_it 3.263 r_scangle_other 3.262 r_mcangle_it 2.369 r_mcangle_other 2.369 r_scbond_it 2.022 r_scbond_other 2.021 r_angle_refined_deg 1.662 r_mcbond_it 1.554 r_mcbond_other 1.553 r_angle_other_deg 1.365 r_nbd_other 0.288 r_symmetry_nbd_refined 0.261 r_symmetry_xyhbond_nbd_refined 0.211 r_nbd_refined 0.202 r_symmetry_nbd_other 0.193 r_xyhbond_nbd_refined 0.173 r_nbtor_refined 0.163 r_ncsr_local_group_1 0.146 r_xyhbond_nbd_other 0.123 r_chiral_restr 0.083 r_symmetry_nbtor_other 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_gen_planes_other 0.005 r_bond_other_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2364 Nucleic Acid Atoms Solvent Atoms 71 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHASER phasing