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Carbonic Anhydrase from Schistosoma Mansoni in complex with clorsulon
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6QQM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 293 20% PEG 6000, 0.1 M citrate pH 5.0
Crystal Properties Matthews coefficient Solvent content 3.22 61.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.8 α = 90 b = 103.8 β = 90 c = 132.9 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-03-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 0.971900 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 89.9 99.7 0.096 0.099 1 27.43 17.26 94460
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.72 97.2 1.18 1 0.706 8.93
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 6QQM 1.679 89.893 94450 4543 99.685 0.168 0.1669 0.1779 0.1951 0.2038 22.801
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.025 0.013 0.025 -0.082
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.771 r_dihedral_angle_4_deg 19.11 r_dihedral_angle_3_deg 11.691 r_dihedral_angle_1_deg 7.544 r_lrange_it 6.774 r_lrange_other 6.641 r_scangle_it 5.233 r_scangle_other 5.089 r_scbond_it 3.47 r_scbond_other 3.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.771 r_dihedral_angle_4_deg 19.11 r_dihedral_angle_3_deg 11.691 r_dihedral_angle_1_deg 7.544 r_lrange_it 6.774 r_lrange_other 6.641 r_scangle_it 5.233 r_scangle_other 5.089 r_scbond_it 3.47 r_scbond_other 3.37 r_mcangle_it 2.998 r_mcangle_other 2.992 r_mcbond_it 2.172 r_mcbond_other 2.158 r_angle_refined_deg 1.832 r_angle_other_deg 1.428 r_nbd_refined 0.207 r_nbd_other 0.205 r_symmetry_nbd_other 0.188 r_nbtor_refined 0.171 r_symmetry_nbd_refined 0.143 r_xyhbond_nbd_refined 0.127 r_symmetry_xyhbond_nbd_refined 0.098 r_chiral_restr 0.083 r_symmetry_nbtor_other 0.08 r_metal_ion_refined 0.077 r_symmetry_xyhbond_nbd_other 0.065 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4494 Nucleic Acid Atoms Solvent Atoms 374 Heterogen Atoms 118
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing