X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE310The purified protein was used in crystallisation trials employing both, a standard screen with approximately 1200 different conditions, as well as crystallisation conditions identified using literature data. Condi- tions initially obtained have been optimised using standard strategies, systematically varying parameters critically influencing crystallisation, such as temperature, protein concentration, drop ratio, and others. These conditions were also refined by systematically varying pH or precipitant concentrations.
Crystal Properties
Matthews coefficientSolvent content
1.2454

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.158α = 90
b = 77.158β = 90
c = 222.649γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2011-05-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA0.97980SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rrim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1366.8297.20.0750.08114.665.722886
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Rrim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.132.395.60.440.4793.075.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTNONE2.1366.8220635161497.250.23890.23530.2869RANDOM34.619
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.71.352.7-4.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.558
r_dihedral_angle_4_deg13.228
r_dihedral_angle_3_deg11.468
r_dihedral_angle_1_deg5.167
r_angle_refined_deg1.077
r_angle_other_deg0.897
r_symmetry_vdw_refined0.153
r_nbtor_refined0.149
r_nbd_refined0.146
r_nbd_other0.123
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.558
r_dihedral_angle_4_deg13.228
r_dihedral_angle_3_deg11.468
r_dihedral_angle_1_deg5.167
r_angle_refined_deg1.077
r_angle_other_deg0.897
r_symmetry_vdw_refined0.153
r_nbtor_refined0.149
r_nbd_refined0.146
r_nbd_other0.123
r_symmetry_vdw_other0.093
r_xyhbond_nbd_refined0.082
r_nbtor_other0.072
r_chiral_restr0.061
r_metal_ion_refined0.059
r_symmetry_hbond_refined0.045
r_symmetry_metal_ion_refined0.022
r_bond_refined_d0.009
r_bond_other_d0.002
r_gen_planes_refined0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2441
Nucleic Acid Atoms
Solvent Atoms190
Heterogen Atoms32

Software

Software
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction