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Chitin-active fungal AA11 LPMO
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4MAH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 0.1 M bicine (pH 9.0) and 20% (w/v) PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.57 52.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.986 α = 90 b = 47.283 β = 90 c = 115.588 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE BioMAX 0.946444 MAX IV BioMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 47.28 99.8 0.061 0.999 19.2 12.3 36807
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 0.361 0.986
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4MAH 1.5 29.886 36738 1959 99.677 0.149 0.1464 0.1458 0.1974 0.1971 28.943
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.348 -1.644 -2.703
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.373 r_dihedral_angle_4_deg 24.047 r_dihedral_angle_3_deg 12.359 r_dihedral_angle_1_deg 7.248 r_scangle_it 5.6 r_scangle_other 5.597 r_lrange_it 5.124 r_scbond_it 5.1 r_scbond_other 5.097 r_lrange_other 4.989
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.373 r_dihedral_angle_4_deg 24.047 r_dihedral_angle_3_deg 12.359 r_dihedral_angle_1_deg 7.248 r_scangle_it 5.6 r_scangle_other 5.597 r_lrange_it 5.124 r_scbond_it 5.1 r_scbond_other 5.097 r_lrange_other 4.989 r_rigid_bond_restr 4.277 r_mcangle_other 3.577 r_mcangle_it 3.516 r_mcbond_it 3.4 r_mcbond_other 3.22 r_angle_refined_deg 1.827 r_angle_other_deg 1.489 r_nbd_refined 0.256 r_symmetry_nbd_other 0.23 r_nbd_other 0.189 r_nbtor_refined 0.184 r_symmetry_nbd_refined 0.143 r_xyhbond_nbd_refined 0.131 r_symmetry_nbtor_other 0.117 r_chiral_restr 0.095 r_symmetry_xyhbond_nbd_refined 0.083 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1527 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing