G-quadruplex structure of the C. elegans telomeric repeat: A two tetrads basket type conformation stabilised by a Hoogsteen C-T base-pair
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 2.4 mM 1H Asc20 | 90% H2O/10% D2O | 90 mM | 6.9 | 1 atm | 288 | Bruker AVANCE III 700 |
| 2 | 2D 1H-13C HSQC | 2.4 mM 1H Asc20 | 90% H2O/10% D2O | 90 mM | 6.9 | 1 atm | 288 | Bruker AVANCE III 700 |
| 3 | 2D 1H-13C HMBC | 2.4 mM 1H Asc20 | 90% H2O/10% D2O | 90 mM | 6.9 | 1 atm | 288 | Bruker AVANCE III 700 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III | 700 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | Amber | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 750 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | TopSpin | Bruker Biospin | |
| 2 | chemical shift assignment | Sparky | Goddard | |
| 3 | structure calculation | ARIA | Linge, O'Donoghue and Nilges | |
| 4 | refinement | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |














