7OJO

Tankyrase 2 in complex with two small molecule fragments


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP277.15100mM Tris pH=8.5, 200 mM Li2SO4, 24% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.3848.41

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.645α = 90
b = 76.386β = 90
c = 148.875γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 2M2020-11-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE MASSIF-10.965459ESRFMASSIF-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3148.8899.90.9815.924.421934
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.380.728

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5NOB2.374.54921873110799.9630.2340.2320.276915.737
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.270.273-3.543
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.583
r_dihedral_angle_4_deg17.25
r_dihedral_angle_3_deg13.143
r_dihedral_angle_1_deg6.75
r_lrange_it3.754
r_lrange_other3.718
r_mcangle_it2.083
r_mcangle_other2.082
r_angle_refined_deg1.198
r_scangle_it1.185
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.583
r_dihedral_angle_4_deg17.25
r_dihedral_angle_3_deg13.143
r_dihedral_angle_1_deg6.75
r_lrange_it3.754
r_lrange_other3.718
r_mcangle_it2.083
r_mcangle_other2.082
r_angle_refined_deg1.198
r_scangle_it1.185
r_scangle_other1.182
r_mcbond_it1.102
r_mcbond_other1.102
r_angle_other_deg1.098
r_scbond_it0.614
r_scbond_other0.597
r_nbd_other0.221
r_symmetry_xyhbond_nbd_refined0.193
r_symmetry_nbd_other0.171
r_symmetry_nbd_refined0.162
r_nbd_refined0.16
r_nbtor_refined0.16
r_xyhbond_nbd_refined0.132
r_ncsr_local_group_10.079
r_symmetry_nbtor_other0.069
r_chiral_restr0.042
r_metal_ion_refined0.012
r_bond_refined_d0.003
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3227
Nucleic Acid Atoms
Solvent Atoms149
Heterogen Atoms96

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing