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Solution structure of oxidized cytochrome c552 from Thioalkalivibrio paradoxus
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600 2 2D 1H-13C HSQC aliphatic 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600 3 2D 1H-13C HSQC aromatic 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600 4 3D 1H-15N NOESY 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600 16 3D 1H-15N NOESY 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 800 5 3D 1H-15N TOCSY 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600 6 3D 1H-13C NOESY aliphatic 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600 7 3D HNCA 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600 8 3D HN(CO)CA 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600 9 3D HNCO 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600 10 3D HCACO 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600 11 3D HNHA 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600 12 3D HCCH-TOCSY 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600 13 3D HNCACB 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600 14 3D HBHA(CO)NH 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600 15 3D H(CCO)NH 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600 17 2D 1H-1H NOESY 0.6 mM Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600 18 2D 1H-1H TOCSY 0.6 mM Cytochrome c552 95% H2O/5% D2O 50 mM 7.0 1 atm 303 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600 2 Bruker AVANCE III 800
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 3.2 Bruker Biospin 2 processing TopSpin 3.2 Bruker Biospin 3 data analysis CcpNmr Analysis CCPN 4 peak picking CcpNmr Analysis CCPN 5 chemical shift assignment ARIA 2.3 Linge, O'Donoghue and Nilges 6 structure calculation CNS 1.21 Brunger, Adams, Clore, Gros, Nilges and Read 7 refinement X-PLOR NIH 3.2 Schwieters, Kuszewski, Tjandra and Clore