7O9U | pdb_00007o9u

Solution structure of oxidized cytochrome c552 from Thioalkalivibrio paradoxus

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
2	2D 1H-13C HSQC aliphatic	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
3	2D 1H-13C HSQC aromatic	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
4	3D 1H-15N NOESY	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
16	3D 1H-15N NOESY	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 800
5	3D 1H-15N TOCSY	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
6	3D 1H-13C NOESY aliphatic	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
7	3D HNCA	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
8	3D HN(CO)CA	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
9	3D HNCO	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
10	3D HCACO	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
11	3D HNHA	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
12	3D HCCH-TOCSY	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
13	3D HNCACB	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
14	3D HBHA(CO)NH	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
15	3D H(CCO)NH	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
17	2D 1H-1H NOESY	0.6 mM Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
18	2D 1H-1H TOCSY	0.6 mM Cytochrome c552	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	600
2	Bruker	AVANCE III	800

NMR Refinement
Method	Details	Software
simulated annealing		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin	3.2	Bruker Biospin
2	processing	TopSpin	3.2	Bruker Biospin
3	data analysis	CcpNmr Analysis		CCPN
4	peak picking	CcpNmr Analysis		CCPN
5	chemical shift assignment	ARIA	2.3	Linge, O'Donoghue and Nilges
6	structure calculation	CNS	1.21	Brunger, Adams, Clore, Gros, Nilges and Read
7	refinement	X-PLOR NIH	3.2	Schwieters, Kuszewski, Tjandra and Clore