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Crystal structure of GH30 (mutant E188A) complexed with aldotriuronic acid from Thermothelomyces thermophila.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7NCX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M SPG pH 7.0, 25% w/v PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.02013588 39.1508331
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.604 α = 90 b = 41.001 β = 91.98 c = 107.786 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 2M 2021-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 46.884 100 0.997 10.5 6.7 67654
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.89 0.564
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7NCX 1.85 46.88 64342 3293 99.95 0.1566 0.1549 0.1665 0.1906 0.2003 RANDOM 21.117
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -0.08 0.49 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.33 r_dihedral_angle_4_deg 16.517 r_dihedral_angle_3_deg 12.469 r_dihedral_angle_1_deg 7.059 r_angle_refined_deg 1.511 r_angle_other_deg 1.415 r_chiral_restr 0.07 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.33 r_dihedral_angle_4_deg 16.517 r_dihedral_angle_3_deg 12.469 r_dihedral_angle_1_deg 7.059 r_angle_refined_deg 1.511 r_angle_other_deg 1.415 r_chiral_restr 0.07 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6720 Nucleic Acid Atoms Solvent Atoms 683 Heterogen Atoms 162
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling PHASER phasing