7NWJ

Solution NMR structure of the N-terminal domain of CEP164 (1-109)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N BEST-TROSY120 uM [U-10% 13C; U-100% 15N] CEP164 (1-109), 25 mM sodium phosphate, 125 mM sodium chloride, 4 mM DTT, 0.4 % complete protease inhibotor cocktail, EDTA free95% H2O/5% D2O185 mM7.41 atm293Bruker AVANCE III HD 800
22D 1H-13C HSQC aliphatic120 uM [U-10% 13C; U-100% 15N] CEP164 (1-109), 25 mM sodium phosphate, 125 mM sodium chloride, 4 mM DTT, 0.4 % complete protease inhibotor cocktail, EDTA free95% H2O/5% D2O185 mM7.41 atm293Bruker AVANCE III HD 800
33D HN(CA)CO120 uM [U-10% 13C; U-100% 15N] CEP164 (1-109), 25 mM sodium phosphate, 125 mM sodium chloride, 4 mM DTT, 0.4 % complete protease inhibotor cocktail, EDTA free95% H2O/5% D2O185 mM7.41 atm293Bruker AVANCE II 700
43D HNCACB120 uM [U-10% 13C; U-100% 15N] CEP164 (1-109), 25 mM sodium phosphate, 125 mM sodium chloride, 4 mM DTT, 0.4 % complete protease inhibotor cocktail, EDTA free95% H2O/5% D2O185 mM7.41 atm293Bruker AVANCE II 700
52D 1H-1H NOESY500 uM [U-10% 13C; U-100% 15N] CEP164 (1-109), 25 mM sodium phosphate, 125 mM sodium chloride, 4 mM DTT, 0.4 % complete protease inhibotor cocktail, EDTA free95% H2O/5% D2O185 mM7.41 atm293Bruker AVANCE III HD 800
62D (HB)CB(CGCD)HD120 uM [U-10% 13C; U-100% 15N] CEP164 (1-109), 25 mM sodium phosphate, 125 mM sodium chloride, 4 mM DTT, 0.4 % complete protease inhibotor cocktail, EDTA free95% H2O/5% D2O185 mM7.41 atm293Bruker AVANCE III 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
2BrukerAVANCE II700
3BrukerAVANCE III HD800
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.2Bruker Biospin
2processingTopSpin3.2Bruker Biospin
3chemical shift assignmentNMRFAM-SPARKY1.3NMRFAM
4structure calculationX-PLOR NIH2.28Schwieters, Kuszewski, Tjandra and Clore
5structure calculationAmber11Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
6data analysisTALOS+3.80F1 Rev 2012.080.14.41Shen, Delaglio, Cormilescu and Bax